畜牧兽医学报 ›› 2019, Vol. 50 ›› Issue (10): 2171-2174.doi: 10.11843/j.issn.0366-6964.2019.10.025

• 研究简报 • 上一篇    

Bta-miR-223靶基因及调控网络的生物信息学分析

韩硕, 王宇轩, 刘娟, 邹紫雯, 李鑫丽, 罗林, 沈冰蕾*   

  1. 黑龙江八一农垦大学, 动物科技学院, 大庆 163319
  • 收稿日期:2019-04-11 出版日期:2019-10-23 发布日期:2019-10-23
  • 通讯作者: 沈冰蕾,主要从事动物分子遗传研究,E-mail:binglei514@163.com
  • 作者简介:韩硕(1992-),女,吉林前郭人,硕士生,主要从事动物抗病育种研究,E-mail:15645977635@163.com
  • 基金资助:
    黑龙江八一农垦大学研究生科研创新资助项目(YJSCX2018-Y33);中国博士后科学基金项目(2018M631970);黑龙江省博士后启动基金项目(LBH-Z16166);黑龙江省教育厅科学技术研究项目(12521365);黑龙江八一农垦大学校青年创新人才项目(CXRC-2016-06);黑龙江省牛病防制重点实验室开放课题(PCBD201708);黑龙江八一农垦大学博士启动基金项目(XDB-2017-06)

Bioinformatics Analysis of Bta-miR-223 Target Genes and Regulatory Network

HAN Shuo, WANG Yuxuan, LIU Juan, ZOU Ziwen, LI Xinli, LUO Lin, SHEN Binglei*   

  1. College of Animal Science and Veterinary Medicine, Heilongjiang Bayi Agricultural University, Daqing 163319, China
  • Received:2019-04-11 Online:2019-10-23 Published:2019-10-23

摘要: 旨在预测奶牛microRNA-223(bta-miR-223)的候选靶基因,并对其进行蛋白质互作分析、信号通路富集分析,构建其可能参与的调控网络,为bta-miR-223参与乳腺炎抗性调控机制研究提供理论依据。利用Targetscan和miRWalk在线分析工具预测其候选靶基因,利用STRING和DAVID在线分析工具分别对候选靶基因进行蛋白质互作分析以及KEGG通路分析,最后使用Cytoscape可视化软件绘制bta-miR-223候选靶基因可能重点参与的调控网络。结果表明,bta-miR-223候选靶基因FBXO30与SMURF2,FBXW7与UBA2等存在蛋白互作关系。KEGG通路富集分析结果显示,这些候选靶基因参与上皮细胞的细菌入侵、胞吞作用以及PI3K-Akt、TGF-β、AMPK等信号通路。结果提示,bta-miR-223的候选靶基因FBXO30、SMURF2、FBXW7、UBA2等可能通过参与抗原加工、先天免疫系统和中性粒细胞脱颗粒反应,以及上皮细胞的细菌入侵、胞吞作用、PI3K-Akt等信号通路发挥重要作用。

Abstract: The aim of this study was to predict candidate genes for bovine microRNA-223 (bta-miR-223), and to perform protein interaction analysis and signal pathway enrichment analysis to construct a regulatory network in which it may participate. This study was conducted to investigate the relationship between mastitis resistance and bta-miR-223 by predicting the candidate target genes and analyzing the associated protein interaction, signal pathway enrichment and the regulatory networks. Targetscan and miRWalk were used to predict its candidate target genes. Protein association analysis and KEGG pathway analysis were performed using STRING, and DAVID, respectively. Cytoscape software was used to visualize the regulatory network in which the bta-miR-223 candidate target genes may be involved. The results indicated that there exist protein interactions among candidate target genes, for example FBXO30 and SMURF2, FBXW7 and UBA2, etc. In addition, the reactome pathways they participate in include antigen processing, the immune system, the innate immune system, and neutrophil degranulation. The results of KEGG pathway enrichment analysis showed that these candidate target genes are involved in epithelial cell bacterial invasion, endocytosis, PI3K-Akt, TGF-β, AMPK and other signaling pathways. The candidate target genes of bta-miR-223, FBXO30, SMURF2, FBXW7, UBA2, etc., may participate in antigen processing, innate immune system and neutrophil degranulation. Moreover, they may play an important regulatory role through bacterial invasion of epithelial cells, endocytosis, and PI3K-Akt signaling pathway.

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